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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">JDS</journal-id>
<journal-title-group><journal-title>Journal of Data Science</journal-title></journal-title-group>
<issn pub-type="epub">1683-8602</issn><issn pub-type="ppub">1680-743X</issn><issn-l>1680-743X</issn-l>
<publisher>
<publisher-name>School of Statistics, Renmin University of China</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">JDS1015</article-id>
<article-id pub-id-type="doi">10.6339/21-JDS1015</article-id>
<article-categories><subj-group subj-group-type="heading">
<subject>Statistical Data Science</subject></subj-group></article-categories>
<title-group>
<article-title>Sign-based Shrinkage Based on an Asymmetric LASSO Penalty</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Kawaguchi</surname><given-names>Eric S.</given-names></name><email xlink:href="mailto:eric.kawaguchi@med.usc.edu">eric.kawaguchi@med.usc.edu</email><xref ref-type="aff" rid="j_jds1015_aff_001">1</xref><xref ref-type="corresp" rid="cor1">∗</xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Darst</surname><given-names>Burcu F.</given-names></name><xref ref-type="aff" rid="j_jds1015_aff_001">1</xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Wang</surname><given-names>Kan</given-names></name><xref ref-type="aff" rid="j_jds1015_aff_002">2</xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Conti</surname><given-names>David V.</given-names></name><xref ref-type="aff" rid="j_jds1015_aff_001">1</xref>
</contrib>
<aff id="j_jds1015_aff_001"><label>1</label>Department of Preventive Medicine, Keck School of Medicine, <institution>University of Southern California</institution>, Los Angeles, California, <country>USA</country></aff>
<aff id="j_jds1015_aff_002"><label>2</label><institution>Google</institution>, Mountain View, California, <country>USA</country></aff>
</contrib-group>
<author-notes>
<corresp id="cor1"><label>∗</label>Corresponding author. Email: <ext-link ext-link-type="uri" xlink:href="mailto:eric.kawaguchi@med.usc.edu">eric.kawaguchi@med.usc.edu</ext-link>.</corresp>
</author-notes>
<pub-date pub-type="ppub"><year>2021</year></pub-date><pub-date pub-type="epub"><day>2</day><month>6</month><year>2021</year></pub-date><volume>19</volume><issue>3</issue><fpage>429</fpage><lpage>449</lpage><supplementary-material id="S1" content-type="archive" xlink:href="jds1015_s001.zip" mimetype="application" mime-subtype="x-zip-compressed">
<caption>
<title>Supplementary Material</title>
<p>The following supplemental material are provided: R files necessary to reproduce the simulation results reported in this manuscript, and PDF providing supplemental tables and figures and the proof of Lemma 2.1.</p>
</caption>
</supplementary-material><history><date date-type="received"><day>16</day><month>3</month><year>2021</year></date><date date-type="accepted"><day>16</day><month>5</month><year>2021</year></date></history>
<permissions><copyright-statement>2021 The Author(s). Published by the School of Statistics and the Center for Applied Statistics, Renmin University of China.</copyright-statement><copyright-year>2021</copyright-year>
<license license-type="open-access" xlink:href="https://creativecommons.org/licenses/by/4.0/">
<license-p>Open access article under the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">CC BY</ext-link> license.</license-p></license></permissions>
<abstract>
<p>Penalized regression provides an automated approach to preform simultaneous variable selection and parameter estimation and is a popular method to analyze high-dimensional data. Since the conception of the LASSO in the mid-to-late 1990s, extensive research has been done to improve penalized regression. The LASSO, and several of its variations, performs penalization symmetrically around zero. Thus, variables with the same magnitude are shrunk the same regardless of the direction of effect. To the best of our knowledge, sign-based shrinkage, preferential shrinkage based on the sign of the coefficients, has yet to be explored under the LASSO framework. We propose a generalization to the LASSO, asymmetric LASSO, that performs sign-based shrinkage. Our method is motivated by placing an asymmetric Laplace prior on the regression coefficients, rather than a symmetric Laplace prior. This corresponds to an asymmetric <inline-formula id="j_jds1015_ineq_001"><alternatives><mml:math>
<mml:msub>
<mml:mrow>
<mml:mi>ℓ</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub></mml:math><tex-math><![CDATA[${\ell _{1}}$]]></tex-math></alternatives></inline-formula> penalty under the penalized regression framework. In doing so, preferential shrinkage can be performed through an auxiliary tuning parameter that controls the degree of asymmetry. Our numerical studies indicate that the asymmetric LASSO performs better than the LASSO when effect sizes are sign skewed. Furthermore, in the presence of positively-skewed effects, the asymmetric LASSO is comparable to the non-negative LASSO without the need to place an <italic>a priori</italic> constraint on the effect estimates and outperforms the non-negative LASSO when negative effects are also present in the model. A real data example using the breast cancer gene expression data from The Cancer Genome Atlas is also provided, where the asymmetric LASSO identifies two potentially novel gene expressions that are associated with <italic>BRCA1</italic> with a minor improvement in prediction performance over the LASSO and non-negative LASSO.</p>
</abstract>
<kwd-group>
<label>Keywords</label>
<kwd>asymmetric Laplace distribution</kwd>
<kwd>high-dimensional statistics</kwd>
<kwd>penalized regression</kwd>
<kwd>quantile regularization</kwd>
<kwd>variable selection</kwd>
</kwd-group>
<funding-group><award-group><funding-source xlink:href="https://doi.org/10.13039/100000002">National Institutes of Health</funding-source><award-id>T32ES013678</award-id></award-group><award-group><funding-source xlink:href="https://doi.org/10.13039/100000054">National Cancer Institute</funding-source><award-id>K99CA246063</award-id></award-group><award-group><funding-source xlink:href="https://doi.org/10.13039/100008227">Achievement Rewards for College Scientists Foundation</funding-source></award-group><award-group><funding-source xlink:href="https://doi.org/10.13039/100000002">NIH</funding-source><award-id>P01CA196569</award-id><award-id>R01HG010297</award-id><award-id>R01CA241410</award-id><award-id>R01CA257328</award-id><award-id>P30CA014089</award-id></award-group><funding-statement>Eric S. Kawaguchi’s work is partially supported through the National Institutes of Health (NIH) grant T32ES013678. Burcu F. Darst’s work is partially supported through the National Cancer Institute (NCI) grant K99CA246063 and the Achievement Rewards for College Scientists Foundation Los Angeles Founder Chapter. The research of David V. Conti is partly supported by the NIH grants P01CA196569, R01HG010297, R01CA241410, R01CA257328, and P30CA014089. </funding-statement></funding-group>
</article-meta>
</front>
<body/>
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