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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">JDS</journal-id>
<journal-title-group><journal-title>Journal of Data Science</journal-title></journal-title-group>
<issn pub-type="epub">1683-8602</issn><issn pub-type="ppub">1680-743X</issn><issn-l>1680-743X</issn-l>
<publisher>
<publisher-name>School of Statistics, Renmin University of China</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">JDS1192</article-id>
<article-id pub-id-type="doi">10.6339/25-JDS1192</article-id>
<article-categories><subj-group subj-group-type="heading">
<subject>Computing in Data Science</subject></subj-group></article-categories>
<title-group>
<article-title>HIMA: An <inline-formula id="j_jds1192_ineq_001"><alternatives><mml:math>
<mml:mi mathvariant="sans-serif">R</mml:mi></mml:math><tex-math><![CDATA[$\mathsf{R}$]]></tex-math></alternatives></inline-formula> Package for High-Dimensional Mediation Analysis</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Zhang</surname><given-names>Haixiang</given-names></name><xref ref-type="aff" rid="j_jds1192_aff_001">1</xref><xref ref-type="fn" rid="j_jds1192_fn_001">†</xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Zheng</surname><given-names>Yinan</given-names></name><xref ref-type="aff" rid="j_jds1192_aff_002">2</xref><xref ref-type="fn" rid="j_jds1192_fn_001">†</xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Hou</surname><given-names>Lifang</given-names></name><xref ref-type="aff" rid="j_jds1192_aff_002">2</xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Liu</surname><given-names>Lei</given-names></name><email xlink:href="mailto:lei.liu@wustl.edu">lei.liu@wustl.edu</email><xref ref-type="aff" rid="j_jds1192_aff_003">3</xref><xref ref-type="corresp" rid="cor1">∗</xref>
</contrib>
<aff id="j_jds1192_aff_001"><label>1</label>School of Mathematics and KL-AAGDM, <institution>Tianjin University</institution>, Tianjin 300350, <country>China</country></aff>
<aff id="j_jds1192_aff_002"><label>2</label>Department of Preventive Medicine, <institution>Northwestern University</institution>, Chicago IL 60611, <country>USA</country></aff>
<aff id="j_jds1192_aff_003"><label>3</label>Division of Biostatistics, <institution>Washington University in St. Louis</institution>, St. Louis, MO 63110, <country>USA</country></aff>
</contrib-group>
<author-notes>
<corresp id="cor1"><label>∗</label>Corresponding author. Email: <ext-link ext-link-type="uri" xlink:href="mailto:lei.liu@wustl.edu">lei.liu@wustl.edu</ext-link>.</corresp><fn id="j_jds1192_fn_001"><label>†</label>
<p>Co-first authors.</p></fn>
</author-notes>
<pub-date pub-type="ppub"><year>2025</year></pub-date><pub-date pub-type="epub"><day>9</day><month>7</month><year>2025</year></pub-date><volume content-type="ahead-of-print">0</volume><issue>0</issue><fpage>1</fpage><lpage>15</lpage><supplementary-material id="S1" content-type="archive" xlink:href="jds1192_s001.zip" mimetype="application" mime-subtype="x-zip-compressed">
<caption>
<title>Supplementary Material</title>
<p>In the Supplementary Material, we provide the R code implementations corresponding to the illustrations presented in Section 4.</p>
</caption>
</supplementary-material><history><date date-type="received"><day>30</day><month>8</month><year>2024</year></date><date date-type="accepted"><day>23</day><month>6</month><year>2025</year></date></history>
<permissions><copyright-statement>2025 The Author(s). Published by the School of Statistics and the Center for Applied Statistics, Renmin University of China.</copyright-statement><copyright-year>2025</copyright-year>
<license license-type="open-access" xlink:href="https://creativecommons.org/licenses/by/4.0/">
<license-p>Open access article under the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">CC BY</ext-link> license.</license-p></license></permissions>
<abstract>
<p>Mediation analysis plays an important role in many research fields, yet it is very challenging to perform estimation and hypothesis testing for high-dimensional mediation effects. We develop a user-friendly <inline-formula id="j_jds1192_ineq_002"><alternatives><mml:math>
<mml:mi mathvariant="sans-serif">R</mml:mi></mml:math><tex-math><![CDATA[$\mathsf{R}$]]></tex-math></alternatives></inline-formula> package <italic>HIMA</italic> for high-dimensional mediation analysis with varying mediator and outcome specifications. The <italic>HIMA</italic> package is a comprehensive tool that accommodates various types of high-dimensional mediation models. This paper offers an overview of the functions within <italic>HIMA</italic> and demonstrates the practical utility of <italic>HIMA</italic> through simulated datasets. The <italic>HIMA</italic> package is publicly available from the Comprehensive <inline-formula id="j_jds1192_ineq_003"><alternatives><mml:math>
<mml:mi mathvariant="sans-serif">R</mml:mi></mml:math><tex-math><![CDATA[$\mathsf{R}$]]></tex-math></alternatives></inline-formula> Archive Network at <uri>https://CRAN.R-project.org/package=HIMA</uri>.</p>
</abstract>
<kwd-group>
<label>Keywords</label>
<kwd>DNA methylation</kwd>
<kwd>mediator selection</kwd>
<kwd>penalized estimate</kwd>
<kwd>quantile regression</kwd>
</kwd-group>
</article-meta>
</front>
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